PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02442.1.p
Common NameLOC105969951, MIMGU_mgv1a015392mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 160aa    MW: 17834.9 Da    PI: 5.4819
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.82.6e-1320116697
             NF-YB   6 rflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       ++lP + v r++k+ l    ++  is  +d+ +   e +  fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl++ l+++r+ 
  Migut.D02442.1.p  20 EELPKTIVRRVVKEKLSqlsSDYEISllRDSLQAFCESARIFIHYLSATANDTCKEANRQIINAEDVFKALEEIDFSEFIGPLRASLEEFRQK 112
                       6789999999999876511145566644799999999999***************************************************99 PP

             NF-YB  94 egek 97 
                       +++k
  Migut.D02442.1.p 113 NADK 116
                       9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-2813156IPR009072Histone-fold
PfamPF008085.2E-72190IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.24E-2222143IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAENGGKEKE LTEKVVSEAE ELPKTIVRRV VKEKLSQLSS DYEISLLRDS LQAFCESARI  60
FIHYLSATAN DTCKEANRQI INAEDVFKAL EEIDFSEFIG PLRASLEEFR QKNADKKSAS  120
SKGKDTSKKA KRKEPPPAQS PGKNKRREVE SDGNDDNAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850173.11e-112PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A022QFH71e-112A0A022QFH7_ERYGU; Uncharacterized protein
STRINGGLYMA11G18960.12e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-40nuclear factor Y, subunit B11